Yu, L.X., Zheng, P., Zhang, T., Rodringuez, J., Main, D. (2017) Genotyping‐by‐sequencing‐based genome‐wide association studies on Verticillium wilt resistance in autotetraploid alfalfa (Medicago sativa L.). Molecular Plant Pathology 18(2):187-194

Jung, S., Lee, T., Yu, J., Ficklin, S.P., Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database (Oxford) baw010.  

Ma, Y., Myers, J.R., Mazourek, M., Coyne, C.J., Main, D., Humann, J.L., McGee, R. (2016). Development of SCAR markers linked to sin-2, the stringless pod locus in pea (Pisum sativum L.). Molecular Plant Breeding 36(7):1-10. 

Shin, S.S., Zheng, P., Fazio, G., Mazzola, M., Main, D., Zhu, Y. (2016). Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Pythium ultimum infection. Physiological and Molecular Plant Pathology 94:16-26.

Ru, S., Hardner, C., Carter, P., Evans, K., Main, D., Peace, C. (2016) Modeling of genetic gain from marker-assisted seedling selection in clonally propagated crops. Horticulture Research 3, 16015.

Sidhu, G., Mohan, A., Zheng, P., Dhaliwal, A.K., Main, D., Gill, K.S. (2015).  Sequencing-Based High Throughput Mutation Detection in Bread Wheat. BMC Genomics 16(1):962.

Jung, S., Bassett, C., Bielenberg, D.C., Cheng, C-H., Dardick, C., Main, D., Meisel, L., Slovin, J., Troggio, M., Schaffer, R.J. (2015)  A standard nomenclature for gene designation in the Rosaceae. Tree Genetics & Genomes 11(5): 108

Yu, L-X., Zhang, T., Zheng, P., Li, Y., Main, D., Greene, S,L. (2015). Identification of Loci Associated with Drought Resistance Traits in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.) Using Genome-Wide Association Studies with Genotyping by Sequencing. PloS One 10(9):e0138931

Xu, J., Yu, J., Kohel, R., Percy, R., Beavis, W., Main, D., Yu, J. (2015). Distribution and evolution of cotton fiber development genes in the fibreless G. raimondii genomeGenomics 106:61-69.

Ru, S., Main, D., Evans, K., Peace, C. (2015). Current applications, challenges, and perspectives of marker-assisted seedling selection in Rosaceae tree fruit breedingTree Genetics and Genomes 11:8.